QUOTE(ford_428cj @ Feb 12 2007, 02:06 PM)

Did ya bleed the air out of the cooling sytem?

Actually Ford has a Valid point here. You GOTTA get all the air out of the system for it to work properly. Here is the best proceedure for filling the cooling system.
Raise the front of the sled a foot or so off the ground.
Take off the thermostat cover and remove thermostat.
Fill the engine through the Thermo housing.
Once full, replace thermostat and cover and finish filling the rest of the system.
Now with the front raised in the air, start and warm up the engine the whole way.
Make sure all of the air is out of the system by leaving the Rad cap half hooked on( first notch ).
this process should take about 10 or 15 minutes.
Set her down and go for a ride.
To answer your question about the Vaccum line, NOT sure of the year you have, But if it has twin fuel pumps and three fittings, one of them needs to be blocked off. the other two can stay hooked to the vaccum lines of the pumps. And do not run it with other one open, good way to run it lean and blow it up.